PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P15540_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 249aa    MW: 26032.7 Da    PI: 6.3085
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P15540_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.61.1e-3857136281
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssss 81 
                             a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+      +   s
  GSMUA_Achr11P15540_001  57 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALasA--AAAGS 136
                             789******************************************************************777321..22222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.2E-3262190IPR005333Transcription factor, TCP
PROSITE profilePS5136928.01663117IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDLRDSSPKF HQALGLPQPH KSEPTTASAA AESRDLAPST GSQAVAAEKD EPRKQLAPKR  60
SSNKDRHTKV EGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQA EPSIIAATGT  120
GTIPASALAS AAAAGSLSRP GATVSAGLHP KLDELTASSS SLATAGGVDG FASMLAAHGQ  180
QLPGLELGLS QDGHVGVLNP QTLNQFYPQI GYGRAAAGSG GSGQLHDQEQ QQQQQERVFS  240
AEDDSDESE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383866.11e-133PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD53e-55TCP20_ARATH; Transcription factor TCP20
TrEMBLM0RSI41e-179M0RSI4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P15540_0011e-179(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.12e-43TCP family protein